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A Journal's Second Thoughts

October 1, 2009

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Caterpillars and butterflies continue to vex the Proceedings of the National Academies of Sciences, a prestigious journal that has found itself criticized for a publishing a paper that many say makes a mockery of evolutionary biology.

While the editors have not publicly retracted the article, a scholar who played a key role in getting the article published released letters to Inside Higher Ed showing that the top editor of the journal has serious doubts about the article she backed. Further, this scholar claims (and has another letter to back her up) that her work is now being blackballed by the journal as a result.

The letters released by Lynn Margulis, a National Academies member who teaches at the University of Massachusetts at Amherst, may well please her critics -- who have been pushing for a stronger public stance by the journal against the article that was published. But the letters also back up the claim of critics of the journal that its two-tiered review process for submissions did not ensure the same level of rigor for those pieces that had a sponsor such as Margulis.

The article in question, published online by PNAS in July, claims that caterpillars and butterflies do not have the same evolutionary history. Rather than viewing the butterfly and caterpillar as two life stages, the article views them as evidence of some sort of lasting mistake from a butterfly-like being accidentally mating with a worm at some point in the distant past.

Most evolutionary scientists disagree with this view, and many were shocked and angered that a prominent journal published the piece. One scientist went so far as to wonder whether this paper was the worst paper of the year, and Scientific American wondered if the PNAS had been taken over by the National Enquirer. And The Times Higher raised questions about whether Margulis -- "a bigwig" -- had ushered "nonsense" into a top journal.

While a spokesman for PNAS told Inside Higher Ed last month that the editors were studying the question, there has been no retraction, nor any corrections. The author of the paper is Donald I. Williamson, a retired professor at the University of Liverpool

It turns out that the editors have very strong doubts about the piece. Randy Schekman, a biologist at the University of California at Berkeley who is editor in chief of PNAS, on September 4 wrote to Williamson -- the chief advocate for the article -- and blamed the publication of the article on the use of a special system (currently being phased out) in which National Academies members can sponsor articles and control the peer review process.

"It seems unlikely that this paper would have passed muster as a Direct Submission," he wrote, referring to the regular process, in which submissions are assigned to experts to review.

Schekman also quotes (anonymously) from a note he received from a National Academies member: "After reading this paper, I am fairly shocked that it could have been published anywhere, but especially in PNAS. It does not seem to contain any supporting data, and yet there are abundant data in the existing literature that show just how ridiculous this idea is....

"I realize that people can disagree on interpretation of data, but in this case, wild claims are made in the complete absence of any data. There is certainly a place for well-formulated hypotheses, but when existing published data show that an idea is untenable (as in this case), its publication does not make much sense. I think this paper will end up being a huge embarrassment to PNAS. Was there any discussion about this article's suitability by the editorial board?"

The letter then goes on to ask Williamson about a quote in the Scientific American article, which said: "[Margulis] says it took '6 or 7' peer reviews before she had the '2 or 3' positive ones necessary to make a case for its publication." This led Schekman to ask for explanation, saying: "Please note that if any of the reviews were withheld from our office (we only received four), it would be a violation of our editorial policies."

In an interview, Margulis said she followed proper procedure and that she was being held to a higher standard than other National Academies members who submit "communicated" articles -- in which the National Academies member puts together the peer review panel, and then sends on the article for publication.

Margulis said she believes that the Williamson article was correct and that it is being criticized by scholars who disagree with its conclusions, and so are trying to question the rigor of its review process.

She said that there may be a wide consensus among scientists about this matter in the United States and Britain, but that elsewhere in Europe, there are scholars who share her views. She also said that PNAS is now treating her unfairly by suspending publication of an article -- previously cleared for PNAS -- for which Margulis recommended publication and on which she was a co-author with two Norwegian scientists.

To back up her views, Margulis released another letter Schekman sent her -- this one on September 11 -- in which he said that the Williamson article would not appear in print and that another article would not appear at all unless she complied with his earlier request. This letter said: "I would appreciate a response to my previous letter regarding the paper you recently communicated to PNAS on behalf of Donald Williamson. As I indicated in my previous letter, the Williamson paper will not be printed until you provide a satisfactory explanation for your apparent selective communication of reviews on this manuscript. In addition, the processing of your contributed paper by Brorson et al. will be suspended until the concerns regarding the Williamson paper are resolved."

Margulis said that the second paper -- about Lyme disease -- could have public health implications, and that there is no reason for the PNAS to suspend publication. "They are blocking this paper because they don't like, in the deepest way, the Williamson paper," she said.

A spokesman for PNAS, who conferred with the top editors there, said that a decision had been made not to respond to Margulis's statements or the released letters. There have been no corrections or retractions of the Williamson article, he said.

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Comments on A Journal's Second Thoughts

  • honesty?
  • Posted by error-prone on October 1, 2009 at 8:00am EDT
  • Margulis said . . . "They are blocking this paper because they don't like, in the deepest way, the Williamson paper."
    However, I see three other pretty good reasons for blocking the paper:
    1. Margulis failed to respond to previous appropriate requests for information; the journal is bringing out the stick.
    2. Margulis's appearance of impropriety in the review process of the Williamson paper raises doubt about the propriety of the process through which her paper was reviewed.
    3. Margulis's appearance of impropriety in the review process of the Williamson paper raises doubt about the intellectual integrity of a co-author (Margulis) of the Lyme disease paper.
    Considering the plain legitimacy of these reasons for blocking her paper, I question why Margulis would suggest that the journal was acting on an illegitimate reason for blocking her paper -- but the first thing that comes to mind is dishonesty.

  • Science in IHE
  • Posted by Cranky Ol' Prof on October 1, 2009 at 8:45am EDT
  • Nice to see IHE publish a (relatively rare) piece about science.

  • Posted by bystander on October 1, 2009 at 10:45am EDT
  • I am not a scientist, and I only teach writing and poetry, so I would like to inquire about the mating of butterflies and caterpillars and suchlike. I mean, could they be actually "attracted" to each other in some hormonal way? I realize that female dogs and cats &c do have hormonal seasons, but I had not imagined that a female dog might mate with some wildly out of species partner--or if so, that such mating would produce offspring that would be fertile and lead to-->evolution. Actually, if butterflies and caterpillars did mate, it sounds like incest, but I am not a scientist. I learn about science by reading the newspaper and IHE.

  • Posted by dorothy on October 1, 2009 at 11:00am EDT
  • It sounds like Margulis has reached that level of academia where she thinks the rules don't apply to her. If the Williamson article was credible it shouldn't have taken subterfuge and rule bending to get it published. The first commenter is dead on. This is just a diversionary complaint to cover up her own lack of professionalism. Was she really so arrogant as to think this process would not reflect poorly on her? She stuck her neck out to support a questionable theory and now she claims to be shocked that it has consequences.

  • Response to bystander
  • Posted by John on October 1, 2009 at 11:45am EDT
  • Williamson did not claim that a butterfly mated with a caterpillar, rather than a butterfly (or adult lepidoptera) mated with a velvet worm. Whether or not they would be attracted to each other be able to produce offspring: think about the likelihood of a human and a sea urchin mating and raising a family together.

  • Posted by Science faculty on October 1, 2009 at 11:45am EDT
  • While "science" as an ideal system of knowing and understanding may be objective, scientists are not, and the peer review process is even less so. The decisions of who gets grants and whose paper gets published is about as political as any other human endeavor. Papers like this as well as the "cold fusion" article in Nature serve as good reminders that people are not perfect, scientists are nothing more than people, and imperfect people publish, review and edit all journals. There are no guarantees. This paper will serve as a great example in my classes of the need to use multiple sources of evidence.

  • look at the evidence?
  • Posted by mathprof on October 1, 2009 at 1:15pm EDT
  • I tried to follow the link to the actual article, but all I could get was the abstract. To see the actual article, the link told me I had to be a subscriber to the Proceedings of the National Academy of Sciences.

    Inside Higher Ed could perform a dual service by getting just-this-one-case permission for its readers to see this article. First, so readers of IHE can decide for themselves whether Williamson is proposing a hypothesis or is presenting actual evidence. Second, to model good scientific practice: you don't argue about something without an appeal to the evidence -- in this case, the content of the article.

  • PNAS
  • Posted by Ecologist on October 1, 2009 at 6:15pm EDT
  • Most journals have editorial standards (e.g. can't simultaneously submit to multiple journals) that they clearly specify and when these are broken I thought it was standard policy to then refuse to publish that author in the future. This seems like what PNAS is doing and it is entirely reasonable. It also highlights the problem with this form of submission. I'm glad PNAS is phasing this out, real peer review is important, particularly for such an influential journal.

  • A third thought
  • Posted by RBG on October 1, 2009 at 7:15pm EDT
  • Take courage, PNAS! Science survived the Scopes trial 84 years ago. It is possible that the real problem here is a matter not of procedure, or of injury, but rather of VANITY.

  • For: MathProf and other academics seeking PNAS
  • Posted by A Librarian on October 1, 2009 at 7:30pm EDT
  • If the link in the IHE article doesn't get you to the article, you might wish to check out your own institution's library catalog. Conduct a journal title search (or title search if a JTS isn't an option) for: Proceedings of the National Academy of Sciences.

    IF your institution has an e-subscription you should be able to see the Williamson article. Otherswise, you may need to wait out the six-month embargo period. It is: "Caterpillers evolved from onychophons by hybridogenesis," by Donald I. Williamson. Published online before print August 28,2009. DOI: 10.1073/pnas.0908357106.

    You may need to go in via your institutional subscription (i.e.g, be proxied as coming from a subscribing institution), to get to: http://www.pnas.org/content/early/2009/08/25/0908357106.full.pdf+html

     

  • Posted by Betsy Smith on October 1, 2009 at 9:15pm EDT
  • It's highly unlikely that I'll ever read the article, but I'd like to thank A Librarian for reminding us that, with a little effort (and maybe some help from our local librarians), we can find out just about anything we want.

  • I agree with Betsy Smith
  • Posted by DFS on October 3, 2009 at 6:30pm EDT
  • I used to walk into a library (with those antiquated things called card catalogues!), and, even though I was a "genius' in my own mind, I eventually had to rely on a librarian for some reason or other.

    All I can say now is, thank God I still have to rely on some librarian!

    They know.

    And so will I, yet again.

  • reasonable?
  • Posted by Miguel Nadal on October 12, 2009 at 9:30pm EDT
  • I thought that if there's someone acusing Margulis of misconduct, he/she must prove it, not that Margulis should prove her innocence! Or is it that the PNAS has gone back to the Middle Ages to act as the Inquisition Tribunal (with annonymous accusations, the accused having to prove her innocense) and get an IUndex of forbidden ideas and papers if they do not accept the Credo and the un-lawful ordeals required? Shame on PNAS!

    If Williamson's papaer is so wrong as some have declared, it should be proven in papers on journals, instead of discredited by an inquisitorial administrative procedure. At least, that's the way science is supposed to work (in opposition to these new Lysenkos)!